BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022G04LP1|AL427945
(778 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1540 739 0.0
>3x_Contig1540
Length = 9505
Score = 739 bits (358), Expect = 0.0
Identities = 414/448 (92%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 331 attcatggatgctkktgaakgkaatccaccwaagcggcaaggggaataatkgaaagatcg 390
|||||| |||||| |||| | |||||||| |||| |||| | |||||| |||| ||||
Sbjct: 5469 attcattgatgcttttgaatgtaatccaccaaagcttcaagtgtaataattgaaatatcg 5410
Query: 391 aakkckktgccaaakkctgacacaggcatccaatctcatcatatctccatctkcatcttt 450
|| | ||||||| | ||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 5409 aattctttgccaaattc-gacacagtcatccaatctcatcatatctccatcttcatcttt 5351
Query: 451 gacgagttcaccaatgacaccgactggtgggagtgatgcaagcttgcataggtcgacagc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5350 gacgagttcaccaatgacaccgactggtgggagtgatgcaagcttgcataggtcgacagc 5291
Query: 511 tgcttcagtgtgaccacgtctggccagaacaccgccttctttggctcttaatggcaccac 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5290 tgcttcagtgtgaccacgtctggccagaacaccgccttctttggctcttaatggcaccac 5231
Query: 571 atgaccaggcttcaagtaatcaatagcggtagtagtcttgkcagctagtttggaacacgt 630
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 5230 atgaccaggcttcaagtaatcaatagcggtagtagtcttgtcagcaagtttggaacacgt 5171
Query: 631 taatgcacgakcatgtgctgaaatccctgttgtkgkkccgtgtkcakaatcacaagtrat 690
|||||||||| |||||||||||||||||||||| | |||||| || |||||||||| ||
Sbjct: 5170 taatgcacgatcatgtgctgaaatccctgttgtggttccgtgtgcataatcacaagtaat 5111
Query: 691 ggkatakgcggktccatgtctgtcatctgcgtractttcacacgaaagatctttcaaaag 750
|| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5110 ggtatatgcggttccatgtctgtcatctgcgtaactttcacacgaaagatctttcaaaag 5051
Query: 751 aggtagatctaaacgatctgcccattcg 778
||||||||||||||||||||||||||||
Sbjct: 5050 aggtagatctaaacgatctgcccattcg 5023
Score = 357 bits (173), Expect = 2e-98
Identities = 265/298 (88%), Gaps = 9/298 (3%)
Strand = Plus / Minus
Query: 1 atcacttagcatgagtaccgaacgcttgccttgaaatttaacccattaaaggttgccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5788 atcacttagcatgagtaccgaacgcttgccttgaaatttaacccattaaaggttgccata 5729
Query: 61 tttgttagtgcagatataaatattgactcttagctgaaggtatgcgtwaagagaaggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5728 tttgttagtgcagatataaatattgactcttagctgaaggtatgcgtaaagagaaggaaa 5669
Query: 121 gaagcaaaggcatttctatatacagagtaattaatttatcttttwtytyttttatttaat 180
||||||||||||||||||||||||||||||| | |||||||| | | | ||||||||
Sbjct: 5668 gaagcaaaggcatttctatatacagagtaat--aagtatcttttatctctagtatttaat 5611
Query: 181 kcgtttttgtatcatttkttwaatgtyaktatagtagkakwattcatgagcctggccatg 240
|||||||||||||||| || || || | ||||| | | ||||| ||||| ||||| |
Sbjct: 5610 tcgtttttgtatcatttgttaaa-gtcattatag-attataattca-gagcc-ggcca-g 5556
Query: 241 atkgtktkwtagtwtaatcgaagatawaggtckaatcagtwaaaccaacaggccgaga 298
|| || | |||| |||||||||||| ||||| || |||| |||||||||||||||||
Sbjct: 5555 at-gtttgatagtataatcgaagataaaggtcgaa-cagtaaaaccaacaggccgaga 5500
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.43 0.719 1.35
Gapped
Lambda K H
1.43 0.719 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3095
Number of Sequences: 1807
Number of extensions: 3095
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 778
length of database: 10,358,551
effective HSP length: 16
effective length of query: 762
effective length of database: 10,329,639
effective search space: 7871184918
effective search space used: 7871184918
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.9 bits)
S1: 11 (23.2 bits)
S2: 48 (99.5 bits)